C. Elegans 36_140c Fragment Browser

Query:

Allowable variables:

chrChromosome on which hits are located
strandStrand of chromosome
hitStartStart location of first hit
hitEndEnd location of last hit

IEISeamsNumber of 'Intron/Exon', 'Exon/Intron' seams in collection of hits
uIEISeamsNumber of unique 'IE', 'EI' seam hits
IEIMonoMonotonicity of 'IE', 'EI'seam hits

EESeamsNumber of 'Exon/Exon' seams
uEESeamsUnique 'EE' seams
EEMonoMonotonicity of 'EE' seams

ExonsNumber of exons
uExonsNumber of unique exons
exonMonoMonotonicity of exons
sPctIdScaled percent identity for exons
pepIdPeptide Ensembl id
pepChrChromosome of peptide's gene
pepStrandStrand of peptide's gene
pepStartStart of peptide's gene
pepStopEnd of peptide's gene
pepLenNt length of peptide
pepExonStartStarting exon of peptide
pepExonStopLast exon of peptide
pepGeneIdPeptide's gene id
pepNumExonsNumber of exons in peptide
pepNumAvailExonsNumber of exons included in query fragments
pepNumAvailIESeamsNumber of IE seams included
pepNumAvailEISeamsNumber of EI seams included
pepNumAvailEESeamsNumber of EE seams included
overlapWhich peptide, if any, does the hit collection overlap?
competitionNumber of competing hits.

Note: An entry corresponds to a collection of hits near to each other.

N J Carriero